Kai Hakala

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Naihui Zhou, Yuxiang Jiang, Timothy Bergquist et al. · Genome biology · 2019 · 482 citations · Full text

Life Sciences, Bioinformatics, Biology +17

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Yuxiang Jiang, Tal Oron, Wyatt T. Clark et al. · Genome biology · 2016 · 452 citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +13

Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization

Sofie Van Landeghem, Jari Björne, Chih-Hsuan Wei et al. · PLoS ONE · 2013 · 123 citations · Full text

Computing, Bioinformatics, Computer Science +16

Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task

Abeed Sarker, Maksim Belousov, Jasper Friedrichs et al. · Journal of the American Medical Informatics Association · 2018 · 100 citations · Full text

Computing, Health Informatics, Data Mining +16

Biomedical Named Entity Recognition with Multilingual BERT

Kai Hakala, Sampo Pyysalo · 2019 · 89 citations · Full text

Computing, Biomedical Informatics, Biomedical Text Mining +10