Marco Pasi

CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures

Christophe Blanchet, Marco Pasi, K. Zakrzewska et al. · Nucleic Acids Research · 2011 · 259 citations · Full text

Nucleic Acid Structures, Structural Bioinformatics, Groove Parameters +13

μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA

Marco Pasi, John H. Maddocks, David L. Beveridge et al. · Nucleic Acids Research · 2014 · 213 citations · Full text

Engineering, Structural Bioinformatics, Genetics +18

Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics

Marco Pasi, John H. Maddocks, Richard Lavery · Nucleic Acids Research · 2015 · 118 citations · Full text

Dna Analysis, Molecular Biology, Molecular Dynamics +19

Analyzing ion distributions around DNA

Richard Lavery, John H. Maddocks, Marco Pasi et al. · Nucleic Acids Research · 2014 · 116 citations · Full text

Expanding the repertoire of DNA shape features for genome-scale studies of transcription factor binding

Jinsen Li, Jared Sagendorf, Tsu-Pei Chiu et al. · Nucleic Acids Research · 2017 · 113 citations · Full text

Structural Bioinformatics, Biomolecular Structure Prediction, Genetics +25