Concepedia

Author

Simone Ciccolella

University of Milano-BicoccaORCID

Also Known As

Ciccolella, Simone, Simone Ciccolella

40

Publications

423

Citations

11

H-Index

37

Concepts

All Affiliations

University of Milano-BicoccaCornell UniversityGeorgia State UniversityWeill Cornell MedicineUniversity of British Columbia
SC

About

Simone Ciccolella is an author at University of Milano-Bicocca specializing in systems biology, computational biology, and bioinformatics.

Top Concepts

#ConceptH-IndexPublicationsCitations

1

Medicine

6

6

134

2

Natural Sciences

3

3

90

3

Biology

3

3

90

4

Engineering

2

2

31

5

Health Sciences

1

1

13

Simone Ciccolella

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12

Publications

367

Citations

11

H-Index

YearCitations

PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data

Salem Malikić, Farid Rashidi Mehrabadi, Simone Ciccolella,

Genome Research

2019

109

Beyond Perfect Phylogeny

Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova,

2017

53

Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses

Simone Ciccolella, Camir Ricketts, Mauricio Soto,

Bioinformatics

2020

49

Triplet-based similarity score for fully multilabeled trees with poly-occurring labels

Simone Ciccolella, Giulia Bernardini, Luca Denti,

Bioinformatics

2020

24

Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach

Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova,

IEEE/ACM Transactions on Computational Biology and Bioinformatics

2018

23

Inferring Cancer Progression from Single-cell Sequencing while Allowing Mutation Losses

Simone Ciccolella, Mauricio Soto, Murray Patterson,

2018

21

gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data

Simone Ciccolella, Mauricio Soto, Murray Patterson,

BMC Bioinformatics

2020

19

Simpler and Faster Development of Tumor Phylogeny Pipelines

Sarwan Ali, Simone Ciccolella, Lorenzo Lucarella,

Journal of Computational Biology

2021

16

Accurate and fast clade assignment via deep learning and frequency chaos game representation

Jorge Avila Cartes, Santosh Anand, Simone Ciccolella,

GigaScience

2022

16

PhISCS - A Combinatorial Approach for Sub-perfect Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data

Salem Malikić, Simone Ciccolella, Farid Rashidi Mehrabadi,

2018

14

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