A robust benchmark for detection of germline large deletions and insertions

Justin M. Zook, Nancy F. Hansen, Nathan D. Olson, +47

Nature Biotechnology

EngineeringData ScienceData MiningGermline Large DeletionsComputational Biology +5

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Michael P. Menden, Dennis Wang, Mike J. Mason, +345

Nature Communications

A Deep Learning Approach to Diagnostic Classification of Prostate Cancer Using Pathology–Radiology Fusion

Pegah Khosravi, Maria Lysandrou, Mahmoud Eljalby, +15

Journal of Magnetic Resonance Imaging

PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data

Salem Malikić, Farid Rashidi Mehrabadi, Simone Ciccolella, +7

Genome Research

A robust benchmark for germline structural variant detection

Justin M. Zook, Nancy F. Hansen, Nathan D. Olson, +47

EngineeringGeneticsMolecular BiologyMolecular GeneticsGenomics +22

Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses

Simone Ciccolella, Camir Ricketts, Mauricio Soto, +5

Bioinformatics

VALOR2: characterization of large-scale structural variants using linked-reads

Fatih Karaoğlanoğlu, Camir Ricketts, Ezgi Ebren, +3

Genome biology

Identification of Strain-Specific Sequences That Distinguish a Mycoplasma gallisepticum Vaccine Strain from Field Isolates

Camir Ricketts, Larissa Pickler, John Maurer, +3

Journal of Clinical Microbiology

Meltos: multi-sample tumor phylogeny reconstruction for structural variants

Camir Ricketts, Daniel N. Seidman, Victoria Popic, +3

Bioinformatics

PhISCS - A Combinatorial Approach for Sub-perfect Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data

Salem Malikić, Simone Ciccolella, Farid Rashidi Mehrabadi, +7

Frequent Allele DropoutGeneticsGenomicsHigh Throughput SequencingPhylogenetics +18