Sara Knaack

A predictive modeling approach for cell line-specific long-range regulatory interactions

Sushmita Roy, Alireza Fotuhi Siahpirani, Deborah Chasman et al. · Nucleic Acids Research · 2015 · 145 citations · Full text

Engineering, Genetics, Gene Regulatory Network +25

In silico prediction of high-resolution Hi-C interaction matrices

Shilu Zhang, Deborah Chasman, Sara Knaack et al. · Nature Communications · 2019 · 128 citations · Full text

Engineering, Hic-reg Predictions, Molecular Biology +24

Single-nuclei transcriptome analysis of the shoot apex vascular system differentiation in <i>Populus</i>

Daniel Conde, Paolo M. Triozzi, Wendell J. Pereira et al. · Development · 2022 · 57 citations · Full text

Inference and Evolutionary Analysis of Genome-Scale Regulatory Networks in Large Phylogenies

Christopher Koch, Jay H. Konieczka, Toni Delorey et al. · Cell Systems · 2017 · 51 citations · Full text

A Pan-Cancer Modular Regulatory Network Analysis to Identify Common and Cancer-Specific Network Components

Sara Knaack, Alireza Fotuhi Siahpirani, Sushmita Roy · Cancer Informatics · 2014 · 34 citations · Full text

Modular Regulatory Network, Engineering, Gene Modules +22