CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses

Vanja Haberle, Alistair R. R. Forrest, Yoshihide Hayashizaki, +2

Nucleic Acids Research

EngineeringGeneticsTranscriptomics TechnologyGene RecognitionBioinformatics Database +15

Epigenetic reprogramming enables the transition from primordial germ cell to gonocyte

Peter W. S. Hill, Harry G. Leitch, Cristina E. Requena, +14

Nature

Germ Cell BiologyChromatinDevelopmental BiologyGerm CellPrimordial Germ Cell +13

Resolving systematic errors in widely used enhancer activity assays in human cells

Felix Muerdter, Łukasz M. Boryń, Ashley R. Woodfin, +10

Nature Methods

Human CellsMedicineImmunologyCell CultureUsed Enhancer Activity +6

Two independent transcription initiation codes overlap on vertebrate core promoters

Vanja Haberle, Nan Li, Yavor Hadzhiev, +14

Nature

ChromatinTranscriptional RegulationGeneticsGene StructureGene Regulation +7

Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis

Chirag Nepal, Yavor Hadzhiev, Christopher Previti, +20

Genome Research

Transcriptional cofactors display specificity for distinct types of core promoters

Vanja Haberle, Cosmas D. Arnold, Michaela Pagani, +3

Nature

ChromatinTranscriptional RegulationSequence MotifCore PromotersNatural Sciences +9

Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation

Hiromasa Morikawa, Naganari Ohkura, Alexis Vandenbon, +267

Proceedings of the National Academy of Sciences

Activated Treg CellsEpigenetic ChangeGeneticsDna MethylationT-regulatory Cell +21

The Aurora B Kinase and the Polycomb Protein Ring1B Combine to Regulate Active Promoters in Quiescent Lymphocytes

Alberto Frangini, Marcela Sjöberg, Mónica Román-Trufero, +7

Molecular Cell

Transcriptional RegulationCell RegulationCell DivisionMolecular RegulationImmunology +9

Differential cofactor dependencies define distinct types of human enhancers

Christoph Neumayr, Vanja Haberle, Leonid Serebreni, +13

Nature

Differential Cofactor DependenciesGeneticsGenetic FactorNeuroscienceTranscription Factors +3

Genome-wide DNA methylation profiling of non-small cell lung carcinomas

Rejane Hughes Carvalho, Vanja Haberle, Jun Hou, +13

Epigenetics & Chromatin