Chuankai Cheng

Robust single-cell Hi-C clustering by convolution- and random-walk–based imputation

Jingtian Zhou, Jianzhu Ma, Yusi Chen et al. · Proceedings of the National Academy of Sciences · 2019 · 189 citations · Full text

Three-dimensional Genome Structure, Molecular Biology, Genomics +18

Expanding the Diversity of Bacterioplankton Isolates and Modeling Isolation Efficacy with Large-Scale Dilution-to-Extinction Cultivation

Michael W. Henson, V. Celeste Lanclos, David M. Pitre et al. · Applied and Environmental Microbiology · 2020 · 56 citations · Full text

Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism

Chuankai Cheng, Edward J. O’Brien, Douglas McCloskey et al. · PLoS Computational Biology · 2019 · 40 citations · Full text

Engineering, Escherichia Coli, Two-dimensional Tradeoff +19

Functional decomposition of metabolism allows a system-level quantification of fluxes and protein allocation towards specific metabolic functions

Matteo Mori, Chuankai Cheng, Brian Taylor et al. · Nature Communications · 2023 · 31 citations · Full text

Ecophysiology and genomics of the brackish water adapted SAR11 subclade IIIa

V. Celeste Lanclos, Anna Rasmussen, Conner Y. Kojima et al. · The ISME Journal · 2023 · 27 citations · Full text