Evolutionary-scale prediction of atomic-level protein structure with a language model

Zeming Lin, Halil Akin, Roshan Rao, +12

Science

EngineeringMachine LearningStructural BioinformaticsBiomolecular Structure PredictionGenetics +15

Evaluating Protein Transfer Learning with TAPE

Roshan Rao, Nicholas Bhattacharya, Neil Thomas, +5

Structured PredictionEngineeringMachine LearningAutoencodersMolecular Biology +20

Language models enable zero-shot prediction of the effects of mutations on protein function

Joshua Meier, Roshan Rao, Robert Verkuil, +3

Structured PredictionEngineeringMachine LearningGeneticsMolecular Biology +19

Evolutionary-scale prediction of atomic level protein structure with a language model

Zeming Lin, Halil Akin, Roshan Rao, +12

EngineeringStructural BioinformaticsBiomolecular Structure PredictionMolecular BiologyLarge Language Model +15

Simulating 500 million years of evolution with a language model

Thomas Hayes, Roshan Rao, Halil Akin, +22

Science

Transformer protein language models are unsupervised structure learners

Roshan Rao, Joshua Meier, Tom Sercu, +2

Structured PredictionEngineeringStructural BioinformaticsContact PredictionMolecular Biology +18

MSA Transformer

Roshan Rao, Jason Liu, Robert Verkuil, +5

Natural Language ProcessingSequence ModellingEngineeringNatural SciencesComputational Linguistics +11

Simulating 500 million years of evolution with a language model

Thomas Hayes, Roshan Rao, Halil Akin, +22

EngineeringLanguage EvolutionMolecular BiologyLarge Language ModelNatural Language Processing +19

T-SNE-CUDA: GPU-Accelerated T-SNE and its Applications to Modern Data

David M. Chan, Roshan Rao, Forrest Huang, +1

Glove Embedding VectorsGeometric LearningConvolutional Neural NetworkEngineeringMachine Learning +20

GPU accelerated t-distributed stochastic neighbor embedding

David M. Chan, Roshan Rao, Forrest Huang, +1

Journal of Parallel and Distributed Computing

Cluster ComputingEngineeringMachine LearningData ScienceRandom Mapping +7