Nicholas Bhattacharya

Author

University of California, Berkeley ORCID

Also Known As

Bhattacharya, Nicholas, Nicholas Bhattacharya

Publications

1.3K

Citations

H-Index

Concepts

All Affiliations

University of California, Berkeley Chan Zuckerberg Initiative (United States)University of Washington Lawrence Berkeley National Laboratory Cold Spring Harbor Laboratory

About

Nicholas Bhattacharya is an author at University of California, Berkeley specializing in bioinformatics, computational biology, and systems biology.

Top Concepts

#	Concept	H-Index	Publications	Citations
1	Engineering	6	6	861
2	Medicine	4	4	168
3	Natural Sciences	4	4	883
4	Biology	1	1	95
5	Biostatistics	1	1	13

Nicholas Bhattacharya

Publications

1.3K

Citations

H-Index

Page 1

	Year	Citations
Evaluating Protein Transfer Learning with TAPE Roshan Rao, Nicholas Bhattacharya, Neil Thomas, Structured PredictionEngineeringMachine LearningAutoencodersMolecular Biology	2019	673
Necrotizing enterocolitis is preceded by increased gut bacterial replication, <i>Klebsiella</i> , and fimbriae-encoding bacteria Matthew R. Olm, Nicholas Bhattacharya, Alexander Crits‐Christoph, Science Advances	2019	174
Differences in the path to exit the ribosome across the three domains of life Khanh Dao Duc, Sanjit Singh Batra, Nicholas Bhattacharya, Nucleic Acids Research BiologyProkaryotic SystemProtein FoldingNatural SciencesProtein Biosynthesis	2019	95
Evaluating Protein Transfer Learning with TAPE Roshan Rao, Nicholas Bhattacharya, Neil Thomas, PubMed Few-shot LearningStructured PredictionEngineeringMachine LearningMolecular Biology	2019	80
Transporter genes in biosynthetic gene clusters predict metabolite characteristics and siderophore activity Alexander Crits‐Christoph, Nicholas Bhattacharya, Matthew R. Olm, Genome Research	2020	63
End-to-end learning of multiple sequence alignments with differentiable Smith–Waterman Samantha Petti, Nicholas Bhattacharya, Roshan Rao, Bioinformatics	2022	38
Deep self-supervised learning for biosynthetic gene cluster detection and product classification Carolina Rios-Martinez, Nicholas Bhattacharya, Ava P. Amini, PLoS Computational Biology Detect BgcsEngineeringMachine LearningGene RecognitionBioinformatics Database	2023	37
Single Layers of Attention Suffice to Predict Protein Contacts Nicholas Bhattacharya, Neil Thomas, Roshan Rao, Structured PredictionEngineeringMachine LearningContact PredictionSingle Layers	2020	35
Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention Nicholas Bhattacharya, Neil Thomas, Roshan Rao, EngineeringStructural BioinformaticsSignal RecognitionMolecular BiologyTransformer Protein Models	2021	23
End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman Samantha Petti, Nicholas Bhattacharya, Roshan Rao,	2021	14

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