Design of synthetic human gut microbiome assembly and butyrate production

Ryan L. Clark, Bryce Connors, David Stevenson, +4

Nature Communications

New TechnologiesEngineeringDysbiosisSynthetic EcologyMetabolic Model +21

Microbial Interaction Network Inference in Microfluidic Droplets

Ryan H. Hsu, Ryan L. Clark, Jin Tan, +4

Cell Systems

MedicineLab-on-a-chipMicrobial EcologyMicrobiologyMicrobiome +3

A metabolic pathway for catabolizing levulinic acid in bacteria

Jacqueline M. Rand, Tippapha Pisithkul, Ryan L. Clark, +13

Nature Microbiology

BiosynthesisMetabolic PathwaysBiochemistryCatabolismMicrobiology +4

Light-optimized growth of cyanobacterial cultures: Growth phases and productivity of biomass and secreted molecules in light-limited batch growth

Ryan L. Clark, Laura L. McGinley, Hugh M. Purdy, +4

Metabolic Engineering

Cyanobacterial CulturesEngineeringMedicinePhotobiologyBiochemical Engineering +6

Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics

Mayank Baranwal, Ryan L. Clark, Jaron Thompson, +3

eLife

Negative interactions determine <i>Clostridioides difficile</i> growth in synthetic human gut communities

Susan Hromada, Yili Qian, Tyler B. Jacobson, +5

Molecular Systems Biology

BiologyMicrobiota StructureDysbiosisMicrobial PathogensNegative Interactions +8

Engineering photosynthetic production of L-lysine

Travis C. Korosh, Andrew L. Markley, Ryan L. Clark, +3

Metabolic Engineering

Photosynthetic ProductionBiosynthesisEngineeringPhotorespirationPhotobiology +3

Micropatterning of 3D Microenvironments for Living Biosensor Applications

William F. Hynes, Nate Doty, Thomas I. Zarembinski, +7

Biosensors

Tissue EngineeringEngineeringHydrogel MatrixBiomaterials DesignBiofabrication +18

Under‐Oil Autonomously Regulated Oxygen Microenvironments: A Goldilocks Principle‐Based Approach for Microscale Cell Culture

Chao Li, Mouhita Humayun, Glenn M. Walker, +12

Advanced Science

Insights into the industrial growth of cyanobacteria from a model of the carbon‐concentrating mechanism

Ryan L. Clark, Jeffrey C. Cameron, Thatcher W. Root, +1

AIChE Journal

EngineeringMicrobial PhysiologyCyanobacteriaMass TransportBiological Carbon Fixation +14