Jaron Thompson

Machine learning to predict microbial community functions: An analysis of dissolved organic carbon from litter decomposition

Jaron Thompson, Renee Johansen, John Dunbar et al. · PLoS ONE · 2019 · 120 citations · Full text

Engineering, Machine Learning, Neural Network +17

Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics

Mayank Baranwal, Ryan L. Clark, Jaron Thompson et al. · eLife · 2022 · 62 citations · Full text

Microbial Communities Influence Soil Dissolved Organic Carbon Concentration by Altering Metabolite Composition

Tayte Campbell, Danielle Ulrich, Jason Toyoda et al. · Frontiers in Microbiology · 2022 · 55 citations · Full text

Organic Geochemistry, Biogeochemistry, Carbon Sequestration +15

Integrating a tailored recurrent neural network with Bayesian experimental design to optimize microbial community functions

Jaron Thompson, Ví­ctor M. Zavala, Ophelia S. Venturelli · PLoS Computational Biology · 2023 · 38 citations · Full text

Engineering, Machine Learning, Machine Learning Tool +19

Carbohydrate complexity limits microbial growth and reduces the sensitivity of human gut communities to perturbations

Erin Ostrem Loss, Jaron Thompson, Pak Lun Kevin Cheung et al. · Nature Ecology & Evolution · 2023 · 36 citations · Full text

Nutrition, Dysbiosis, Host-microbe Interactions +16