Barry Demchak

Cytoscape Automation: empowering workflow-based network analysis

David Otasek, John H. Morris, Jorge Bouças et al. · Genome biology · 2019 · 1.7K citations · Full text

Cluster Computing, Cytoscape Automation, Engineering +19

Biological Network Exploration with Cytoscape 3

Gang Su, John H. Morris, Barry Demchak et al. · Current Protocols in Bioinformatics · 2014 · 1K citations · Full text

Using deep learning to model the hierarchical structure and function of a cell

Jianzhu Ma, Michael Yu, Samson Fong et al. · Nature Methods · 2018 · 431 citations · Full text

Biology, Hierarchical Structure, Geometric Learning +11

NDEx, the Network Data Exchange

Dexter Pratt, Jing Chen, David Welker et al. · Cell Systems · 2015 · 266 citations · Full text

Named Data Networking, Engineering, Data Science +5

Cytoscape: the network visualization tool for GenomeSpace workflows

Barry Demchak, Tim Hull, Michael Reich et al. · F1000Research · 2014 · 211 citations · Full text

Network Visualization Tool, Engineering, Genetics +18