Yasubumi Sakakibara

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

Toshiaki Namiki, Tsuyoshi Hachiya, Hideaki L Tanaka et al. · Nucleic Acids Research · 2012 · 692 citations · Full text

Life Sciences, Bioinformatics, Microbiology +13

RNA secondary structure prediction using deep learning with thermodynamic integration

Kengo Sato, Manato Akiyama, Yasubumi Sakakibara · Nature Communications · 2021 · 496 citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +16

Stochastic context-free grammers for tRNA modeling

Yasubumi Sakakibara, Michael P. Brown, Richard Hughey et al. · Nucleic Acids Research · 1994 · 390 citations · Full text

Engineering, Bioinformatics, Computational Biology +6

Convolutional neural network based on SMILES representation of compounds for detecting chemical motif

Maya Hirohara, Yutaka Saitō, Yuki Koda et al. · BMC Bioinformatics · 2018 · 230 citations · Full text

Computing, Chemistry, Computer Science +17

Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences

Wei-Hao Shang, Tetsuya Hori, Atsushi Toyoda et al. · Genome Research · 2010 · 189 citations · Full text

Life Sciences, Biology, Genetics +17