Christina Boucher

MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing

Nathalie Bonin, Enrique Doster, Hannah Worley et al. · Nucleic Acids Research · 2022 · 169 citations · Full text

Genomics, Antibiotic Resistance, Bioinformatics Database +21

Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems

Pablo Rovira, Tim A. McAllister, Steven M. Lakin et al. · Frontiers in Microbiology · 2019 · 88 citations · Full text

Dairy Production Systems, Antibiotic Resistance, Antibiotic Resistance Genes +16

MONI: A Pangenomic Index for Finding Maximal Exact Matches

Massimiliano Rossi, Marco Antônio Oliva, Ben Langmead et al. · Journal of Computational Biology · 2022 · 85 citations · Full text

Prefix-free parsing for building big BWTs

Christina Boucher, Travis Gagie, Alan Kuhnle et al. · CINECA IRIS Institutial research information system (University of Pisa) · 2019 · 73 citations

Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences

Steven M. Lakin, Alan Kuhnle, Bahar Alipanahi et al. · Communications Biology · 2019 · 46 citations · Full text