MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data

Enrique Doster, Steven M. Lakin, Christopher Dean, +6

Nucleic Acids Research

MEGARes: an antimicrobial resistance database for high throughput sequencing

Steven M. Lakin, Chris Dean, Noelle Noyes, +10

Nucleic Acids Research

BiologyAntimicrobial Resistance GeneHealth SciencesBioinformatics DatabaseBiological Database +13

MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing

Nathalie Bonin, Enrique Doster, Hannah Worley, +8

Nucleic Acids Research

GenomicsAntibiotic ResistanceBioinformatics DatabaseHigh Throughput SequencingDrug Resistance +19

Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain

Xiang Yang, Noelle Noyes, Enrique Doster, +11

Applied and Environmental Microbiology

Microbial PathogensPathogen DetectionBacterial PathogensGlobal Public HealthFood Microbiology +14

Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing

Noelle Noyes, Jennifer K. Parker, Chris Dean, +11

Microbiome

Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems

Pablo Rovira, Tim A. McAllister, Steven M. Lakin, +11

Frontiers in Microbiology

Dairy Production SystemsAntibiotic ResistanceAntibiotic Resistance GenesFood MicrobiologyMicrobial Ecology +14

Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period

Enrique Doster, Pablo Rovira, Noelle Noyes, +12

Frontiers in Microbiology

DysbiosisEducationShotgun SequencingLivestock HealthVeterinary Microbiology +18

Large effects of consumer offense on ecosystem structure and function

Michael F. Chislock, Orlando Sarnelle, Brianna K. Olsen, +2

Ecology

BiologyTrophic ImpactPrey AdaptationsFitnessConsumer Offense +9

Effects of a Saccharomyces cerevisiae fermentation product on liver abscesses, fecal microbiome, and resistome in feedlot cattle raised without antibiotics

K. L. Huebner, J. N. Martin, C. J. Weissend, +12

Scientific Reports

DysbiosisEducationShotgun SequencingLivestock HealthVeterinary Microbiology +15

Investigation of tylosin in feed of feedlot cattle and effects on liver abscess prevalence, and fecal and soil microbiomes and resistomes1

Margaret D. Weinroth, J. N. Martin, Enrique Doster, +6

Journal of Animal Science

DysbiosisEconomic ReturnEducationVeterinary MicrobiologyAntibiotic Resistance +14