Nelle Varoquaux

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie et al. · Genome biology · 2015 · 2.9K citations · Full text

Life Sciences, Bioinformatics, Genetics +17

A statistical approach for inferring the 3D structure of the genome

Nelle Varoquaux, Ferhat Ay, William Stafford Noble et al. · Bioinformatics · 2014 · 277 citations · Full text

Life Sciences, Biology, Genetics +12

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics

Ling Xu, Zhaobin Dong, Dawn Chiniquy et al. · Nature Communications · 2021 · 260 citations · Full text

Life Sciences, Botany, Microbiology +17

Three-dimensional modeling of the<i>P. falciparum</i>genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression

Ferhat Ay, Evelien M. Bunnik, Nelle Varoquaux et al. · Genome Research · 2014 · 243 citations · Full text

Life Sciences, Biology, Genetics +17

Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses

Nelle Varoquaux, Benjamin Cole, Cheng Gao et al. · Proceedings of the National Academy of Sciences · 2019 · 237 citations · Full text

Agriculture, Crop Sciences, Plant Sciences +17