Shuiyang Shi

A Transformer-Based Ensemble Framework for the Prediction of Protein–Protein Interaction Sites

Minjie Mou, Ziqi Pan, Zhimeng Zhou et al. · Research · 2023 · 96 citations · Full text

Life Sciences, Biochemistry, Bioinformatics +13

DRESIS: the first comprehensive landscape of drug resistance information

Xiuna Sun, Yintao Zhang, Hanyang Li et al. · Nucleic Acids Research · 2022 · 72 citations · Full text

Medicine, Bioinformatics, Pharmacology +14

AnnoPRO: a strategy for protein function annotation based on multi-scale protein representation and a hybrid deep learning of dual-path encoding

Lingyan Zheng, Shuiyang Shi, Mingkun Lu et al. · Genome biology · 2024 · 66 citations · Full text

Life Sciences, Bioinformatics, Computational Biology +9

MoDAFold: a strategy for predicting the structure of missense mutant protein based on AlphaFold2 and molecular dynamics

Lingyan Zheng, Shuiyang Shi, Xiuna Sun et al. · Briefings in Bioinformatics · 2024 · 28 citations · Full text

Life Sciences, Biochemistry, Bioinformatics +6

MecDDI: Clarified Drug–Drug Interaction Mechanism Facilitating Rational Drug Use and Potential Drug–Drug Interaction Prediction

Wei Hu, Wei Zhang, Ying Zhou et al. · Journal of Chemical Information and Modeling · 2023 · 19 citations

Pharmacy, Pharmacology, Drug Discovery +15