Jeremy L. Muhlich

LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures

Qiaonan Duan, Corey Flynn, Mario Niepel et al. · Nucleic Acids Research · 2014 · 338 citations · Full text

Life Sciences, Bioinformatics, Systems Biology +17

ChemBank: a small-molecule screening and cheminformatics resource database

Kathleen Petri Seiler, Grinson George, Mary Pat Happ et al. · Nucleic Acids Research · 2007 · 279 citations · Full text

Pharmacy, Bioinformatics, Chemical Biology +17

Programming biological models in Python using PySB

Carlos F. Lopez, Jeremy L. Muhlich, John A. Bachman et al. · Molecular Systems Biology · 2013 · 254 citations · Full text

Life Sciences, Bioinformatics, Biology +7

MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging

Denis Schapiro, Artem Sokolov, Clarence Yapp et al. · Nature Methods · 2021 · 244 citations · Full text

Engineering, Biomedical Engineering, Cell Biology +14

From word models to executable models of signaling networks using automated assembly

Benjamin M. Gyori, John A. Bachman, Kartik Subramanian et al. · Molecular Systems Biology · 2017 · 190 citations · Full text

Engineering, Pharmacology, Biological Systems Modeling +12