Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry

Charlotte Giesen, Hao A. O. Wang, Denis Schapiro, +10

Nature Methods

Subcellular ResolutionTissue ImagingOncologic ImagingMedical ImagingMicroscopy +10

High-definition spatial transcriptomics for in situ tissue profiling

Sanja Vicković, Gökçen Eraslan, Fredrik Salmén, +15

Nature Methods

A molecular single-cell lung atlas of lethal COVID-19

Johannes C. Melms, Jana Biermann, Huachao Huang, +41

Nature

Lethal Covid-19Respiratory InfectionCovid-19Infectious Respiratory Disease

histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data

Denis Schapiro, Hartland W. Jackson, Swetha Raghuraman, +7

Nature Methods

MedicineBioimage AnalysisHistopathologyPathologyImmunophenotyping +6

Spatial multi-omic map of human myocardial infarction

Christoph Kuppe, Ricardo O. Ramirez Flores, Zhijian Li, +39

Nature

CartographyCardiovascular DiseaseBiostatisticsHuman Myocardial InfarctionPublic Health +3

Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment

William L. Hwang, Karthik A. Jagadeesh, Jimmy A. Guo, +62

Nature Genetics

Trajectory AnalysisTumor BiologyPancreatic CancerTumor HeterogeneitySpatial Transcriptome Profiling +11

Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer

Anniina Färkkilä, D. Gulhan, Julia Casado, +24

Nature Communications

Cancer ImmunosurveillancePd-1 InhibitionMedicineImmunologyImmune Checkpoint Inhibition +9

A Map of Human Type 1 Diabetes Progression by Imaging Mass Cytometry

Nicolas Damond, Stefanie Engler, Vito Riccardo Tomaso Zanotelli, +8

Cell Metabolism

Diabetes EpidemiologyDiabetesPathologyMass CytometryBiostatistics +4

Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry

Daniel Schulz, Vito Riccardo Tomaso Zanotelli, Jana Fischer, +5

Cell Systems

Explainable multiview framework for dissecting spatial relationships from highly multiplexed data

Jovan Tanevski, Ricardo O. Ramirez Flores, Attila Gábor, +2

Genome biology