Shushan Toneyan

Evaluating deep learning for predicting epigenomic profiles

Shushan Toneyan, Ziqi Tang, Peter K. Koo · Nature Machine Intelligence · 2022 · 66 citations · Full text

Engineering, Machine Learning, Data Science +4

EvoAug: improving generalization and interpretability of genomic deep neural networks with evolution-inspired data augmentations

Nicholas Keone Lee, Ziqi Tang, Shushan Toneyan et al. · Genome biology · 2023 · 33 citations · Full text

ETV6 dependency in Ewing sarcoma by antagonism of EWS-FLI1-mediated enhancer activation

Yuan Gao, Xue‐Yan He, Xiaoli Wu et al. · Nature Cell Biology · 2023 · 31 citations · Full text

Ewing Sarcoma, Medicine, Viral Oncology +8

Current approaches to genomic deep learning struggle to fully capture human genetic variation

Ziqi Tang, Shushan Toneyan, Peter K. Koo · Nature Genetics · 2023 · 18 citations · Full text

Systems Biology, Engineering, Machine Learning +9

Interpreting cis-regulatory interactions from large-scale deep neural networks

Shushan Toneyan, Peter K. Koo · Nature Genetics · 2024 · 18 citations · Full text