Software for Quantification of Labeled Bacteria from Digital Microscope Images by Automated Image Analysis

Jyrki Selinummi, Jenni J. Seppälä, Olli Yli‐Harja, +1

BioTechniques

Digital Microscope ImagesAutomated Image AnalysisPathogen DetectionLabeled BacteriaBacteriology +6

Computational Framework for Simulating Fluorescence Microscope Images With Cell Populations

Antti Lehmussola, Pekka Ruusuvuori, Jyrki Selinummi, +2

IEEE Transactions on Medical Imaging

EngineeringMicroscopyBiomedical EngineeringComputational ImagingLight Microscopy +15

ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol–induced lipid body formation

Elizabeth S. Gold, Stephen A. Ramsey, Mark J. Sartain, +5

The Journal of Experimental Medicine

Bright Field Microscopy as an Alternative to Whole Cell Fluorescence in Automated Analysis of Macrophage Images

Jyrki Selinummi, Pekka Ruusuvuori, Irina Podolsky, +5

PLoS ONE

Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images

Pekka Ruusuvuori, Tarmo Äijö, Sharif Chowdhury, +6

BMC Bioinformatics

Cholesterol supports the retinoic acid‐induced synaptic vesicle formation in differentiating human SH‐SY5Y neuroblastoma cells

Jertta‐Riina Sarkanen, Jonna Nykky, Jutta Siikanen, +3

Journal of Neurochemistry

Synaptic Vesicle FormationExtracellular MicrovesiclesSynaptic SignalingCellular PhysiologySynaptic Vesicles +15

Benchmark set of synthetic images for validating cell image analysis algorithms

Pekka Ruusuvuori, Antti Lehmussola, Jyrki Selinummi, +3

Synthetic Images of High-Throughput Microscopy for Validation of Image Analysis Methods

Antti Lehmussola, Pekka Ruusuvuori, Jyrki Selinummi, +2

Proceedings of the IEEE

EngineeringMicroscopyBiomedical EngineeringFluorescence Microscopy ImagesTissue Imaging +19

Simulating fluorescent microscope images of cell populations

Antti Lehmussola, Jyrki Selinummi, Pekka Ruusuvuori, +2

EngineeringMicroscopyFluorescent Microscope ImagesCell CultureBiomedical Engineering +15

Segmentation of Folds in Tissue Section Images

Sakari Palokangas, Jyrki Selinummi, Olli Yli‐Harja

Conference proceedings

EngineeringImage AnalysisPattern RecognitionBiostatisticsK-means Clustering +19