Integrative Analysis of the <i>Caenorhabditis elegans</i> Genome by the modENCODE Project

Mark Gerstein, Zhi John Lu, Eric L. Van Nostrand, +126

Science

The PINK1–Parkin pathway promotes both mitophagy and selective respiratory chain turnover in vivo

Evelyn S. Vincow, Gennifer E. Merrihew, Ruth E. Thomas, +4

Proceedings of the National Academy of Sciences

MitophagyLung InflammationGeneticsMitochondrial Protein TurnoverOxidative Stress +14

Comparative analysis of the transcriptome across distant species

Mark Gerstein, Joel Rozowsky, Koon‐Kiu Yan, +93

Nature

Multiplexed MS/MS for improved data-independent acquisition

Jarrett D. Egertson, Andreas Kuehn, Gennifer E. Merrihew, +9

Nature Methods

EngineeringMultiplexingMeasurementMultiplexed Ms/msData Acquisition +6

Analysis of Peptide MS/MS Spectra from Large-Scale Proteomics Experiments Using Spectrum Libraries

Barbara Frewen, Gennifer E. Merrihew, Christine C. Wu, +2

Analytical Chemistry

Molecular BiologyProteomic TechnologyProteomicsTandem Mass SpectraBiochemistry +14

Dual-Pressure Linear Ion Trap Mass Spectrometer Improving the Analysis of Complex Protein Mixtures

Tonya Second, Justin D. Blethrow, Jae C. Schwartz, +6

Analytical Chemistry

Protein AnalysisMolecular BiologyProteomic TechnologyAnalytical InstrumentationBioanalysis +17

Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows

Dario Amodei, Jarrett D. Egertson, Brendan MacLean, +7

Journal of the American Society for Mass Spectrometry

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

Daniel A. Skelly, Gennifer E. Merrihew, Michael Riffle, +15

Genome Research

Expediting the Development of Targeted SRM Assays: Using Data from Shotgun Proteomics to Automate Method Development

Amol Prakash, Daniela M. Tomazela, Barbara Frewen, +4

Journal of Proteome Research

EngineeringMolecular BiologyProteomic TechnologyBioanalysisAutomate Method Development +21

Improving mitochondrial function with SS-31 reverses age-related redox stress and improves exercise tolerance in aged mice

Matthew D. Campbell, Jicheng Duan, Ashton T. Samuelson, +14

Free Radical Biology and Medicine

AgingMitochondrial FunctionLongevityExercise PhysiologyPhysiology +8