Concepedia

Multiplexed MS/MS for improved data-independent acquisition

Jarrett D. Egertson, Andreas Kuehn, Gennifer E. Merrihew, Nicholas W. Bateman, Brendan MacLean, Ying S. Ting, Jesse D. Canterbury, Donald M Marsh, Markus Kellmann, Vlad Zabrouskov,

Nature Methods · 2013 · 307 citations · 16 references

DOIFull text

Open access

Concepts

References

16

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

Brendan MacLean, Daniela M. Tomazela, Nicholas Shulman et al. · Bioinformatics · 2010 · 5K citations · Full text

, , +16

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

Ludovic Gillet, Pedro Navarro, Stephen Tate et al. · Molecular & Cellular Proteomics · 2012 · 3K citations · Full text

, , +16

A Model for Random Sampling and Estimation of Relative Protein Abundance in Shotgun Proteomics

Hongbin Liu, Rovshan G. Sadygov, John R. Yates · Analytical Chemistry · 2004 · 2.5K citations

, , +16

Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

John D. Venable, Meng‐Qiu Dong, James A. Wohlschlegel et al. · Nature Methods · 2004 · 835 citations

, , +16

More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS

Annette Michalski, Jüergen Cox, Matthias Mann · Journal of Proteome Research · 2011 · 712 citations · Full text

, , +16