Reo Yoo

Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks

Anand V. Sastry, Saugat Poudel, Kevin Rychel et al. · 2021 · 59 citations · Full text

Engineering, Available Expression Data, Gene Regulatory Network +22

Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection

Reo Yoo, Kevin Rychel, Saugat Poudel et al. · mSphere · 2022 · 47 citations · Full text

Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius

Siddharth Chauhan, Saugat Poudel, Kevin Rychel et al. · Frontiers in Microbiology · 2021 · 36 citations · Full text

Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures

Yuan Yuan, Yara Seif, Kevin Rychel et al. · mSystems · 2022 · 26 citations · Full text

iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia

Anand V. Sastry, Yuan Yuan, Saugat Poudel et al. · PLoS Computational Biology · 2024 · 21 citations · Full text

Engineering, Genetics, Molecular Biology +24