Siddharth Chauhan

Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks

Anand V. Sastry, Saugat Poudel, Kevin Rychel et al. · 2021 · 59 citations · Full text

Engineering, Available Expression Data, Gene Regulatory Network +22

Pangenome analysis reveals the genetic basis for taxonomic classification of the Lactobacillaceae family

Akanksha Rajput, Siddharth Chauhan, Omkar S. Mohite et al. · Food Microbiology · 2023 · 52 citations · Full text

Comparative Genomics, Genetics, Taxonomy +22

Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection

Reo Yoo, Kevin Rychel, Saugat Poudel et al. · mSphere · 2022 · 47 citations · Full text

Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius

Siddharth Chauhan, Saugat Poudel, Kevin Rychel et al. · Frontiers in Microbiology · 2021 · 36 citations · Full text

Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of <i>Pseudomonas aeruginosa</i>

Akanksha Rajput, Hannah Tsunemoto, Anand V. Sastry et al. · Nucleic Acids Research · 2022 · 34 citations · Full text