Yara Seif

Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance

Erol Kavvas, Edward Catoiu, Nathan Mih et al. · Nature Communications · 2018 · 182 citations · Full text

Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits

Yara Seif, Erol Kavvas, Jean‐Christophe Lachance et al. · Nature Communications · 2018 · 149 citations · Full text

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data

Jean‐Christophe Lachance, Colton J. Lloyd, Jonathan M. Monk et al. · PLoS Computational Biology · 2019 · 111 citations · Full text

Engineering, Genomics, Metabolic Model +22

A workflow for generating multi-strain genome-scale metabolic models of prokaryotes

Charles J. Norsigian, Xin Fang, Yara Seif et al. · Nature Protocols · 2019 · 98 citations · Full text

Biology, Metabolic Network, Prokaryotic System +14

Revealing 29 sets of independently modulated genes in <i>Staphylococcus aureus</i> , their regulators, and role in key physiological response

Saugat Poudel, Hannah Tsunemoto, Yara Seif et al. · Proceedings of the National Academy of Sciences · 2020 · 94 citations · Full text