Concepedia

Optimal seed solver: optimizing seed selection in read mapping

Hongyi Xin, Sunny Nahar, Richard Zhu, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu

Bioinformatics · 2015 · 40 citations · 34 references

DOIFull text

Open access

Abstract

Supplementary data are available at Bioinformatics online.

References

34

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 58.3K citations · Full text

, , +7

A general method applicable to the search for similarities in the amino acid sequence of two proteins

Saul B. Needleman, Christian D. Wunsch · Journal of Molecular Biology · 1970 · 11.4K citations

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Identification of common molecular subsequences

Temple F. Smith, Michael S. Waterman · Journal of Molecular Biology · 1981 · 10K citations

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An integrated map of genetic variation from 1,092 human genomes

Nature · 2012 · 8.1K citations · Full text

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A map of human genome variation from population-scale sequencing

Nature · 2010 · 8K citations · Full text

, , +6