Concepedia

Cold tolerance in rice germinating seeds revealed by deep RNAseq analysis of contrasting indica genotypes

Andressa Dametto, Raul Antônio Sperotto, Janete Mariza Adamski, Édina A.R. Blasi, Denise Cargnelutti, Luiz Felipe Valter de Oliveira, Felipe Klein Ricachenevsky, Jéferson Nunes Fregonezi, Jorge Ernesto de Araújo Mariath, Renata Pereira da Cruz,

Plant Science · 2015 · 61 citations · 57 references

DOI

Concepts

References

57

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

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Analyzing real-time PCR data by the comparative CT method

Thomas D. Schmittgen, Kenneth J. Livak · Nature Protocols · 2008 · 26.7K citations

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A scaling normalization method for differential expression analysis of RNA-seq data

Mark D. Robinson, Alicia Oshlack · Genome biology · 2010 · 8.6K citations · Full text

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Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics

Ana Conesa, Stefan Götz · International Journal of Plant Genomics · 2008 · 2.2K citations · Full text

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Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR

Mukesh Jain, Aashima Nijhawan, Akhilesh K. Tyagi et al. · Biochemical and Biophysical Research Communications · 2006 · 1.2K citations

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