Nature Metabolism · 2025 · 29 citations · 44 references
Life SciencesNutritionNutritional SciencesHuman NutritionMetagenomicsMicrobiome ResearchMetagenomic AnalysisNutrient Intake EstimationNutritional GastroenterologyFecal Microbiome AnalysisHuman Gut MetagenomicsStool BiomarkersStool ProcessingStool SamplingStool Water Content
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fastp: an ultra-fast all-in-one FASTQ preprocessor
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Prodigal: prokaryotic gene recognition and translation initiation site identification
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MultiQC: summarize analysis results for multiple tools and samples in a single report
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Diet rapidly and reproducibly alters the human gut microbiome
Lawrence A. David, Corinne F. Maurice, Rachel N. Carmody et al. · Nature · 2013 · 10.2K citations · Full text
Improved metagenomic analysis with Kraken 2
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