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Massively parallel sample preparation for multiplexed single-cell proteomics using nPOP

Andrew Leduc, Luke Khoury, Joshua Cantlon, Saad Khan, Nikolai Slavov

Nature Protocols · 2024 · 45 citations · 57 references

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57

DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput

Vadim Demichev, Christoph B. Messner, Spyros I. Vernardis et al. · Nature Methods · 2019 · 3.4K citations · Full text

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MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics

Andy T. Kong, Felipe da Veiga Leprevost, Dmitry M. Avtonomov et al. · Nature Methods · 2017 · 2.6K citations · Full text

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Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics

Paul J. Boersema, Reinout Raijmakers, Simone Lemeer et al. · Nature Protocols · 2009 · 1.4K citations

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Ultrasensitive proteome analysis using paramagnetic bead technology

Christopher S. Hughes, Sophia Föehr, David Garfield et al. · Molecular Systems Biology · 2014 · 1.3K citations · Full text

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Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues

Roland Bruderer, Oliver M. Bernhardt, Tejas Gandhi et al. · Molecular & Cellular Proteomics · 2015 · 1.3K citations · Full text

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