mSystems · 2024 · 15 citations · 83 references
Life SciencesGeneticsMicrobiologyGenomicsHost-pathogen InteractionsInnate ImmunityBacterial PathogenesisBacterial Virulence FactorsImmune Responses To InfectionInnate Immune Signaling PathwaysMicrobial Virulence FactorsPathogen Virulence FactorsEvolution Of Virulence FactorsInnate Immunity GenomicsInnate Immunity PathwaysMicrobial Virulence EvolutionMicroglial Responses To InfectionMolecular Evolution Of PathogensPathogen Fitness DeterminantsVirulence Determinants
The emergence of biochemically and genetically tractable host model organisms for infection studies holds the promise to accelerate the pace of discoveries related to the evolution of innate immunity and the dissection of conserved mechanisms of cell-autonomous defenses. Here, we have used the genetically and biochemically tractable infection model system Dictyostelium discoideum / Mycobacterium marinum to apply a genome-wide transposon-sequencing experimental strategy to reveal comprehensively which mutations confer a fitness advantage or disadvantage during infection and compare these to a similar experiment performed using the murine microglial BV2 cells as host for M. marinum to identify conservation of virulence pathways between hosts.
83
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text
KEGG: Kyoto Encyclopedia of Genes and Genomes
Minoru Kanehisa · Nucleic Acids Research · 2000 · 39.2K citations · Full text
KEGG: Kyoto Encyclopedia of Genes and Genomes
Hiroyuki Ogata, Susumu Goto, Kazushige Sato et al. · Nucleic Acids Research · 1999 · 32.4K citations · Full text
UniProt: the universal protein knowledgebase in 2021
Alex Bateman, María Martin, Sandra Orchard et al. · Nucleic Acids Research · 2020 · 7K citations · Full text