Concepedia

Genomic analysis of lineage-specific transmission of multidrug resistance tuberculosis in China

Yifan Li, Xianglong Kong, Wan-mei Song, Y.-P. Li, Yingying Li, Weiwei Fang, Jieyu Yang, Chun-bao Yu, Huaichen Li, Yao Liu

Emerging Microbes & Infections · 2023 · 16 citations · 36 references

DOIFull text

Open access

Abstract

MDR-TB epidemic in China is predominantly driven by the spread of highly transmissible Beijing strains. A range of drug-resistance mutations of L2 MDR-TB strains displayed minimal fitness costs and may facilitate their transmission.

References

36

PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

Shaun Purcell, Benjamin M. Neale, Katherine EO Todd-Brown et al. · The American Journal of Human Genetics · 2007 · 34.9K citations · Full text

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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler et al. · Molecular Biology and Evolution · 2014 · 25.9K citations · Full text

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

Pablo Cingolani, Adrian E. Platts, Le Lily Wang et al. · Fly · 2012 · 12.1K citations · Full text

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Statsmodels: Econometric and Statistical Modeling with Python

Skipper Seabold, Josef Perktold · Proceedings of the Python in Science Conferences · 2010 · 6.1K citations · Full text

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TreeTime: Maximum-likelihood phylodynamic analysis

Pavel Sagulenko, Vadim Puller, Richard A. Neher · Virus Evolution · 2017 · 1.3K citations · Full text

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