Nature Microbiology · 2023 · 25 citations · 43 references
Life SciencesMicrobiologyNutritional SciencesAntimicrobial ResistanceMicrobiome ResearchMicronutrient DeficiencyEarly-life NutritionGut MicrobiomeGut MicrobiotaMicrobiome DysbiosisMicronutrient Deficiency In ChildhoodMicronutrient RequirementsAntibiotic Resistance GenesAntibiotic-associated Microbiota ChangesEarly-life Gut MicrobiomeGut Microbiome AlterationsGut Microbiome DysbiosisGut Microbiota EffectsIntestinal Microbiota EffectsIntrinsic Antibiotic Resistance
43
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text
Improved metagenomic analysis with Kraken 2
Derrick E. Wood, Jennifer Lu, Ben Langmead · Genome biology · 2019 · 7.1K citations · Full text
UniProt: the Universal Protein Knowledgebase in 2023
Alex Bateman, María Martin, Sandra Orchard et al. · Nucleic Acids Research · 2022 · 7K citations · Full text