Concepedia

Multiscale modeling reveals the ion-mediated phase separation of nucleosome core particles

Tiedong Sun, Nikolay Korolev, Vishal Minhas, Alexander Mirzoev, Alexander P. Lyubartsev, Lars Nordenskiöld

Biophysical Journal · 2023 · 14 citations · 70 references

DOIFull text

Open access

Concepts

References

70

Canonical sampling through velocity rescaling

Giovanni Bussi, Davide Donadio, Michele Parrinello · The Journal of Chemical Physics · 2007 · 18.4K citations · Full text

, , +17

Crystal structure of the nucleosome core particle at 2.8 Å resolution

Karolin Luger, Armin W. Mäder, Robin K. Richmond et al. · Nature · 1997 · 9.4K citations

, , +14

A new force field for molecular mechanical simulation of nucleic acids and proteins

Scott J. Weiner, Peter A. Kollman, David A. Case et al. · Journal of the American Chemical Society · 1984 · 4.6K citations

, , +17

Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9Å Resolution

Curt A. Davey, David F. Sargent, Karolin Luger et al. · Journal of Molecular Biology · 2002 · 1.5K citations

, , +14

Organization of Chromatin by Intrinsic and Regulated Phase Separation

Bryan A. Gibson, Lynda K. Doolittle, Liv Jensen et al. · Cell · 2019 · 1.1K citations · Full text

, , +12