AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

Oleg Trott, Arthur J. Olson

Journal of Computational Chemistry

Features and development of <i>Coot</i>

Paul Emsley, Bernhard Lohkamp, W. G. Scott, +1

Acta Crystallographica Section D Biological Crystallography

SyntaxModel ValidationEngineeringVisual Programming LanguageMedicine +13

SWISS-MODEL: homology modelling of protein structures and complexes

Andrew Waterhouse, Martino Bertoni, Stefan Bienert, +9

Nucleic Acids Research

BiochemistryBiomolecular Structure PredictionProtein FoldingSwiss-model ServerNatural Sciences +12

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

Ali Punjani, John L. Rubinstein, David J. Fleet, +1

Nature Methods

EngineeringPhysicsStructural BioinformaticsCryogenicsStructure Determination +4

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

Shawn Zheng, Eugene Palovcak, Jean‐Paul Armache, +3

Nature Methods

Electron MicroscopyPhysicsMicroscopyMicroscopy MethodApplied Physics +4

AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings

Jérôme Eberhardt, Diogo Santos‐Martins, Andreas F. Tillack, +1

Journal of Chemical Information and Modeling

Gctf: Real-time CTF determination and correction

Kai Zhang

Journal of Structural Biology

Clustal Omega for making accurate alignments of many protein sequences

Fabian Sievers, Desmond G. Higgins

Protein Science

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

Rubén Sánchez-García, Josué Gómez-Blanco, Ana Cuervo, +3

Communications Biology

EngineeringMachine LearningStructural BioinformaticsMolecular BiologyPresent Deepemhancer +18

Addressing preferred specimen orientation in single-particle cryo-EM through tilting

Yong Zi Tan, Philip R. Baldwin, Joseph H. Davis, +4

Nature Methods

EngineeringPhysicsMicroscopyCryogenicsApplied Physics +3