iScience · 2023 · 14 citations · 82 references
Life SciencesBiologyEntomologyComparative GenomicsInsect PhysiologyMetabolismBeetle BiologyFeeding PhysiologyInsect Life History EcologyInsect-plant InteractionsMetabolic Pathways In FermentationPlant-insect InteractionsComparative Metabolic GenomicsInsect MetabolismInsect-microbe SymbiosisIntegration Of Metabolic SignalsPhloem-feeding PhysiologySap ExudationSap-feeding Insect InteractionsSap-feeding Insects
Psyllids, a group of insects that feed on plant sap, have a symbiotic relationship with an endosymbiont called Carsonella . Carsonella synthesizes essential amino acids and vitamins for its psyllid host, but lacks certain genes required for this process, suggesting a compensatory role of psyllid host genes. To investigate this, gene expression was compared between two psyllid species, Bactericera cockerelli and Diaphorina citri , in specialized cells where Carsonella resides (bacteriomes). Collaborative psyllid genes, including horizontally transferred genes, showed patterns of conserved gene expression; however, species-specific patterns were also observed, suggesting differences in the nutritional metabolism between psyllid species. Also, the recycling of nitrogen in bacteriomes may primarily rely on glutamate dehydrogenase ( GDH ). Additionally, lineage-specific gene clusters were differentially expressed in B. cockerelli and D. citri bacteriomes and are highlighted here. These findings shed light on potential host adaptations for the regulation of this symbiosis due to host, microbiome, and environmental differences.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea, Geo Pertea, Corina Antonescu et al. · Nature Biotechnology · 2015 · 15.5K citations · Full text