Distinct increase in antimicrobial resistance genes among Vibrio parahaemolyticus in recent decades worldwide

BLAST+: architecture and applications

Christiam Camacho, George Coulouris, Vahram Avagyan et al. · BMC Bioinformatics · 2009 · 23.2K citations · Full text

Life Sciences, Bioinformatics, Biology +13

Prokka: rapid prokaryotic genome annotation

Torsten Seemann · Bioinformatics · 2014 · 19.6K citations

Life Sciences, Bioinformatics, Microbiology +13

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

Ivica Letunić, Peer Bork · Nucleic Acids Research · 2021 · 11.7K citations · Full text

Life Sciences, Bioinformatics, Visualization +16

VSEARCH: a versatile open source tool for metagenomics

Torbjørn Rognes, Tomáš Flouri, Ben Nichols et al. · PeerJ · 2016 · 11K citations · Full text

Life Sciences, Bioinformatics, Comparative Genomics +11

Roary: rapid large-scale prokaryote pan genome analysis

Andrew J. Page, Carla Cummins, Martin Hunt et al. · Bioinformatics · 2015 · 5.9K citations · Full text

Life Sciences, Bioinformatics, Microbiology +13