Molecules and Cells · 2023 · 10 citations · 45 references
Life SciencesBiochemistryBiophysicsPhotosynthesisStructural BiologyStructural BiophysicsPhotochemistryPhotosynthesis BiochemistryPhotosynthesis In MicroorganismsPhotosynthetic Energy ConversionPhotosynthetic Energy TransferPhotosynthetic PigmentsCharge-transfer TransitionsChromophore PhotochemistryChromophore PhotophysicsColor TuningHybrid Molecular MechanicsHybrid Quantum MechanicsPhotoinduced Charge TransferSpectral Tuning Of Pigments
Orange carotenoid protein (OCP) of photosynthetic cyanobacteria binds to ketocarotenoids noncovalently and absorbs excess light to protect the host organism from light-induced oxidative damage. Herein, we found that mutating valine 40 in the α3 helix of Gloeocapsa sp. PCC 7513 ( Gl OCP1) resulted in blue- or red-shifts of 6-20 nm in the absorption maxima of the lit forms. We analyzed the origins of absorption maxima shifts by integrating X-ray crystallography, homology modeling , molecular dynamics simulations, and hybrid quantum mechanics/molecular mechanics calculations. Our analysis suggested that the single residue mutations alter the polar environment surrounding the bound canthaxanthin , thereby modulating the degree of charge transfer in the photoexcited state of the chromophore. Our integrated investigations reveal the mechanism of color adaptation specific to OCPs and suggest a design principle for color-specific photoswitches.
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VMD: Visual molecular dynamics
William Humphrey, Andrew Dalke, Klaus Schulten · Journal of Molecular Graphics · 1996 · 66.6K citations
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
Sudhir Kumar, Glen Stecher, Michael Li et al. · Molecular Biology and Evolution · 2018 · 38.8K citations · Full text