Aging · 2023 · 131 citations · 65 references
Life SciencesCell BiologyMolecular BiologyAgingEpigeneticsGene ExpressionBiological AgingCellular AgingCellular ReprogrammingCellular SenescenceEpigenetic ReprogrammingEpigenetics Of AgingActive Dna DemethylationAge-related ReprogrammingBiological ClocksDna Methylation PatternsEpigenetic ClocksEpigenetic Regulation Of AgingEpigenome ReprogrammingHigh-throughput Screening Assays
A hallmark of eukaryotic aging is a loss of epigenetic information, a process that can be reversed. We have previously shown that the ectopic induction of the Yamanaka factors OCT4, SOX2, and KLF4 (OSK) in mammals can restore youthful DNA methylation patterns, transcript profiles, and tissue function, without erasing cellular identity, a process that requires active DNA demethylation. To screen for molecules that reverse cellular aging and rejuvenate human cells without altering the genome, we developed high-throughput cell-based assays that distinguish young from old and senescent cells, including transcription-based aging clocks and a real-time nucleocytoplasmic compartmentalization (NCC) assay. We identify six chemical cocktails, which, in less than a week and without compromising cellular identity, restore a youthful genome-wide transcript profile and reverse transcriptomic age. Thus, rejuvenation by age reversal can be achieved, not only by genetic, but also chemical means.
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StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea, Geo Pertea, Corina Antonescu et al. · Nature Biotechnology · 2015 · 15.5K citations · Full text