One Health compartment analysis of ESBL-producing <i>Escherichia coli</i> reveals multiple transmission events in a rural area of Madagascar

Abstract

Our findings stress the importance of using a phylogenomic approach on ESBL-Ec samples in various putative compartments to obtain a clear baseline of AMR transmissions in rural settings, where one wants to identify risk factors associated with transmission or to measure the effect of 'One Health' interventions in low- and middle-income countries.