Journal of Saudi Chemical Society · 2023 · 15 citations · 53 references
PharmacyMedicinal ChemistryPharmacologyDrug DiscoveryPharmacophore ModelingStructure-activity RelationshipsLigand BindingMolecular ModelingPharmacophore-based Lead DiscoveryQuantitative Structure-activity RelationshipsStructure-activity Relationship AnalysisStructure-based Pharmacophore ModelingComputational Structure-activity ModelingEnzyme Complex StabilityMonoamine Oxidase InhibitionMonoamine Oxidase InhibitorsProtein-ligand Complex ModelingProtein-ligand Interaction Pharmacophore ModelsStructure-activity Relationship ModelingStructure-based Lead Discovery
Halogenated inhibitors showed robust, reversible, and selective monoamine oxidase-B (MAO-B) inhibitory efficacy in candidates that were derived from them. Our team has previously synthesized and assessed a panel of halogenated chalcones and coumarin for the study on MAO-B inhibition. The aim of this study was to build GA-MLR based QSAR models and predictive 3D Pharmacophore models, as well as to investigate the relationship between halogenated derivatives and MAO-B inhibitory activity. The robust statistical significance in the parameter (R2=0.78 and Q2=0.69) was demonstrated. Best Hypo1 contains one hydrophobic and two aromatic rings. The lead molecule for quantum mechanics was performed, and it was revealed that it would bind to proteins and provide stability. To determine the stability of the ligand-enzyme complex, a thorough molecular dynamics analysis of the lead compounds was accomplished.
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An open source chemical structure curation pipeline using RDKit
A. Patrícia Bento, Anne Hersey, Eloy Félix et al. · Journal of Cheminformatics · 2020 · 715 citations · Full text
ChemoPy: freely available python package for computational biology and chemoinformatics
Dongsheng Cao, Qing‐Song Xu, Qian‐Nan Hu et al. · Bioinformatics · 2013 · 245 citations · Full text
Pharmacy, Bioinformatics, Chemistry +17