Concepedia

Microgravity stress alters bacterial community assembly and co-occurrence networks during wheat seed germination

Jingjing Cui, Zhihao Yi, Dengbo Chen, Yuming Fu, Hong Liu

The Science of The Total Environment · 2023 · 15 citations · 51 references

Concepts

AgricultureMicrobiologyPlant SciencesMicrobial EcologyPlant-microbe InteractionsSeed ScienceCereal MicrobiologyMicrobial Community DynamicsMicrobial Interactions In EcosystemsMicrobial RecruitmentPlant MicrobiomePlant-associated Microbial CommunitiesBacterial Community DynamicsMicrobial Co-occurrence NetworksPlant-associated Bacterial CommunitiesSeed Germination BiologySeed Germination EstablishmentSeed MicrobiologyWheat Microbiology

References

51

Gephi: An Open Source Software for Exploring and Manipulating Networks

Mathieu Bastian, Sébastien Heymann, Mathieu Jacomy · Proceedings of the International AAAI Conference on Web and Social Media · 2009 · 11.3K citations · Full text

Computing, Data Science, Visualization +17

VSEARCH: a versatile open source tool for metagenomics

Torbjørn Rognes, Tomáš Flouri, Ben Nichols et al. · PeerJ · 2016 · 11K citations · Full text

Life Sciences, Bioinformatics, Comparative Genomics +11

The igraph software package for complex network research

Gábor Csárdi, Tamás Nepusz · Medical Entomology and Zoology · 2006 · 10.4K citations

Computing, Biostatistics, Computer Networks +10

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Morgan G. I. Langille, Jesse Zaneveld, J. Gregory Caporaso et al. · Nature Biotechnology · 2013 · 9.4K citations · Full text

Life Sciences, Microbiology, Molecular Biology +16

The ecology of the microbiome: Networks, competition, and stability

Katharine Z. Coyte, Jonas Schlüter, Kevin R. Foster · Science · 2015 · 2.8K citations

Life Sciences, Ecology, Microbiology +17