Linking DOM characteristics to microbial community: The potential role of DOM mineralization for arsenic release in shallow groundwater

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +13

ggplot2: Elegant Graphics for Data Analysis

Cedric E. Ginestet · Journal of the Royal Statistical Society Series A (Statistics in Society) · 2011 · 14.8K citations

Computing, Biostatistics, Visualization +8

Salmon provides fast and bias-aware quantification of transcript expression

Rob Patro, Geet Duggal, Michael I. Love et al. · Nature Methods · 2017 · 13.7K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +12

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

Ivica Letunić, Peer Bork · Nucleic Acids Research · 2021 · 11.7K citations · Full text

Life Sciences, Bioinformatics, Visualization +16

Improved metagenomic analysis with Kraken 2

Derrick E. Wood, Jennifer Lu, Ben Langmead · Genome biology · 2019 · 7.1K citations · Full text

Life Sciences, Bioinformatics, Microbiology +11