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A novel SNP panel developed for targeted genotyping-by-sequencing (GBS) reveals genetic diversity and population structure of Musa spp. germplasm collection

Roanne R. Gardoce, Anand Noel C. Manohar, Jay-Vee S. Mendoza, Maila S. Tejano, Jen Daine L. Nocum, Grace C. Lachica, Lavernee S. Gueco, Fe M. Dela Cueva, Darlon V. Lantican

Molecular Genetics and Genomics · 2023 · 11 citations · 34 references

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References

34

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

Shaun Purcell, Benjamin M. Neale, Katherine EO Todd-Brown et al. · The American Journal of Human Genetics · 2007 · 36.1K citations · Full text

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The variant call format and VCFtools

Petr Danecek, Adam Auton, Gonçalo R. Abecasis et al. · Bioinformatics · 2011 · 17.8K citations · Full text

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Twelve years of SAMtools and BCFtools

Petr Danecek, James Bonfield, Jennifer Liddle et al. · GigaScience · 2021 · 15.9K citations · Full text

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APE: Analyses of Phylogenetics and Evolution in R language

Emmanuel Paradis, Julien Claude, Korbinian Strimmer · Bioinformatics · 2004 · 12.6K citations · Full text

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