Microbiology Spectrum · 2023 · 15 citations · 65 references
Life SciencesMicrobiologySoil SciencesMicrobial EcologySoil MicrobiologySoil ScienceEnvironmental MicrobiomesMicrobial Community DynamicsMicrobial DiversityMicrobiome CompositionMicrobiome DiversityMicrobiome FunctionMicrobial Community CompositionMicrobial Community StructureMicrobial Nutrient CyclingMicrobial Soil EcologySoil Microbial Community CompositionSoil Microbial Community StructureSoil MicrobiomesSoil Properties
Soil microbes perform a multitude of essential biological functions, including organic matter decomposition, nutrient cycling, and soil structure preservation. Qatar is one of the most hostile and fragile arid environments on earth and is expected to face a disproportionate impact of climate change in the coming years. Thus, it is critical to establish a baseline understanding of microbial community composition and to assess how soil edaphic factors correlate with microbial community composition in this region. Although some previous studies have quantified culturable microbes in specific Qatari habitats, this approach has serious limitations, as in environmental samples, approximately only 0.5% of cells are culturable. Hence, this method vastly underestimates natural diversity within these habitats. Our study is the first to systematically characterize the chemistry and total microbiota associated with different habitats present in the State of Qatar.
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DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations