International Journal of Molecular Sciences · 2023 · 11 citations · 48 references
Life SciencesBioinformaticsMolecular BiologyGene ExpressionMolecular PhysiologyPathway AnalysisDiabetes MellitusDisease Network BiologyMolecular Interaction NetworksNetwork-based Biomarker DiscoveryProtein-protein Interaction AnalysisProtein-protein Interaction NetworksGene Expression Network AnalysisGlucose Metabolism BiomarkersImmunofluorescence AssaysImpaired Glucose TolerancePathway-based Biomarker DiscoveryPi3k SignalingPi3k-akt Signaling PathwayType 2 Diabetes Mellitus Pathogenesis
Early identification of pre-diabetes provides an opportunity for intervention and treatment to delay its progression to type 2 diabetes mellitus (T2DM). We aimed to identify the biomarkers of impaired glucose tolerance (IGT) through bioinformatics analysis. The GSE76896 dataset, including non-diabetic (ND), IGT, and T2DM clinical samples, was deeply analyzed to identify 309 Co-DEGs for IGT and T2DM. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses indicated that inflammatory responses and the PI3K-AKT signaling pathway are important patho-physiological features of IGT and T2DM. Protein-protein interaction (PPI) network analysis and cytoHubba technolgy identified seven hub genes: namely, CCL2, CXCL1, CXCL8, EDN1, FGF13, MMP1, and NGF. The expression and ROC curves of these hub genes were validated using the GSE38642 dataset. Through an immunofluorescence assay, we found that the expression of FGF13 in islets of mice in the HFD and T2DM groups was significantly lower than in the control group. Similarly, the level of FGF13 in the sera of IGT and T2DM patients was lower than that in the healthy group. Together, these results suggest that FGF13 can be treated as a novel biomarker of IGT, which may provide new targets for the diagnosis and treatment of pre-diabetes and T2DM.
48
Pouya Saeedi, Inga Petersohn, Belma Malanda et al. · Diabetes Research and Clinical Practice · 2019 · 10.5K citations
Increased Number of Islet-Associated Macrophages in Type 2 Diabetes
Jan A. Ehses, Aurel Perren, Elisabeth Eppler et al. · Diabetes · 2007 · 779 citations
Terkel Christiansen, Bjørn Richelsen, Jens Meldgaard Bruun · International Journal of Obesity · 2004 · 410 citations