Protein & Cell · 2022 · 84 citations · 126 references
Life SciencesMolecular BiologyNeuroscienceApoptosisGene ExpressionTranscriptomicsAge-related Hearing ChangesAge-related Hearing LossBiological AgingCellular AgingCochlear NeuroscienceSingle-cell TranscriptomicsAge-related Cochlear ChangesAge-related Hearing DeclineEndoplasmic Reticulum Stress-induced Cell DeathEr Stress SensorsStria Vascularis AtrophyStria Vascularis FunctionUnfolded Protein ResponseUnfolded Protein Response Genes
Progressive functional deterioration in the cochlea is associated with age-related hearing loss (ARHL). However, the cellular and molecular basis underlying cochlear aging remains largely unknown. Here, we established a dynamic single-cell transcriptomic landscape of mouse cochlear aging, in which we characterized aging-associated transcriptomic changes in 27 different cochlear cell types across five different time points. Overall, our analysis pinpoints loss of proteostasis and elevated apoptosis as the hallmark features of cochlear aging, highlights unexpected age-related transcriptional fluctuations in intermediate cells localized in the stria vascularis (SV) and demonstrates that upregulation of endoplasmic reticulum (ER) chaperon protein HSP90AA1 mitigates ER stress-induced damages associated with aging. Our work suggests that targeting unfolded protein response pathways may help alleviate aging-related SV atrophy and hence delay the progression of ARHL.
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Mutation of the mouse klotho gene leads to a syndrome resembling ageing.
PubMed · 1997 · 66.6K citations
HTSeq—a Python framework to work with high-throughput sequencing data
Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text