Concepedia

Within-patient evolution of plasmid-mediated antimicrobial resistance

Javier DelaFuente, Laura Toribio-Celestino, Alfonso Santos-López, Ricardo León‐Sampedro, Aída Alonso-del Valle, Coloma Costas, Marta Hernández-García, Lun Cui, Jerónimo Rodríguez-Beltrán, David Bikard,

Nature Ecology & Evolution · 2022 · 78 citations · 56 references

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References

56

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations

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Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler et al. · Molecular Biology and Evolution · 2014 · 27.5K citations · Full text

, , +15

Prokka: rapid prokaryotic genome annotation

Torsten Seemann · Bioinformatics · 2014 · 19.6K citations

, , +13

Minimap2: pairwise alignment for nucleotide sequences

Heng Li · Bioinformatics · 2018 · 16.8K citations · Full text

, , +17