Nature Reviews Methods Primers · 2022 · 72 citations · 130 references
Life SciencesCell BiologyMolecular BiologyGene ExpressionGenomicsTranscriptomicsSingle-cell AnalysisSingle-cell GenomicsSingle-cell Rna Sequencing AnalysisSingle-cell TranscriptomicsTemporal TranscriptomicsRna Sequencing (Rna-seq)Single-cell Rna SequencingTime-resolved Single-cell Analysis
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STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
Comprehensive Integration of Single-Cell Data
Tim Stuart, Andrew Butler, Paul Hoffman et al. · Cell · 2019 · 16.9K citations · Full text
Massively parallel digital transcriptional profiling of single cells
Grace Zheng, Jessica M. Terry, Phillip Belgrader et al. · Nature Communications · 2017 · 7.8K citations · Full text
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
Daniel C. Koboldt, Qunyuan Zhang, David E. Larson et al. · Genome Research · 2012 · 5.3K citations · Full text