Emerging infectious diseases · 2022 · 33 citations · 22 references
Veterinary MedicineInfectious DiseasesPoultry ScienceEmerging Infectious DiseasesMolecular VirologyVirologyPoultry Infectious DiseasesViral Diseases Of PoultryViral InfectionsViral ZoonosesZoonotic Diseases In PoultryZoonotic VirusesAvian Influenza VirusAvian Influenza VirusesAvian Virus SurveillanceCross-reactive ImmunityEmerging Zoonotic VirusesPandemic Influenza SurveillanceZoonotic Avian VirusesZoonotic Disease Reservoirs
Zoonotic and pandemic influenza continue to pose threats to global public health. Pandemics arise when novel influenza A viruses, derived in whole or in part from animal or avian influenza viruses, adapt to transmit efficiently in a human population that has little population immunity to contain its onward transmission. Viruses of previous pandemic concern, such as influenza A(H7N9), arose from influenza A(H9N2) viruses established in domestic poultry acquiring a hemagglutinin and neuraminidase from influenza A viruses of aquatic waterfowl. We report a novel influenza A(H3N8) virus in chicken that has emerged in a similar manner and that has been recently reported to cause zoonotic disease. Although they are H3 subtype, these avian viruses are antigenically distant from contemporary human influenza A(H3N2) viruses, and there is little cross-reactive immunity in the human population. It is essential to heighten surveillance for these avian A(H3N8) viruses in poultry and in humans.
22
MUSCLE: multiple sequence alignment with high accuracy and high throughput
R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen et al. · Bioinformatics · 2018 · 29.7K citations · Full text
BLAST+: architecture and applications
Christiam Camacho, George Coulouris, Vahram Avagyan et al. · BMC Bioinformatics · 2009 · 23.2K citations · Full text